mira.tl.fetch_ontology

mira.tl.fetch_ontology(list_id, ontology='WikiPathways_2019_Human')

Fetch enrichment results from an ontology.

Parameters

list_idstr

genelist ID returned by post_genelist

onotologystr, default = “WikiPathways_2019_Human”

Retrieve results for this ontology. For a full list of ontologies, see Enrichr.

Returns

resultsdict

Dictionary with schema:

{
    <ontology> : {
        [
            {'rank' : <rank>,
            'term' : <term>,
            'pvalue' : <pval>,
            'zscore': <zscore>,
            'combined_score': <combined_score>,
            'genes': [<gene1>, ..., <geneN>],
            'adj_pvalue': <adj_pval>},
            ...,
        ]
    }
}