mira.tl.motif_scan#

Functions

get_motif_glob_str()

get_motif_hits(peak_sequences_file, num_peaks)

get_motif_hits_in_peaks(adata[, chrom, ...])

Scan peak sequences for motif hits given by JASPAR position frequency matrices using MOODS 3.

get_peak_sequences(peaks, genome, output_file)

list_motif_ids()

list_motif_matrices()

validate_peaks(peaks)