mira.tl.get_topic_cross_correlation#
- mira.tl.get_topic_cross_correlation(adata1, adata2, *, key='X_topic_compositions', adata1_name='RNA', adata2_name='ATAC')#
Get DataFrame of pearson cross-correlation between expression and accessibility topics.
- Parameters
- expr_adataanndata.AnnData
AnnData object with expression features, must have “X_topic_compositions” in .obsm.
- atac_adataanndata.AnnData
AnnData object with accessibility features, must have “X_topic_compositions” in .obsm.
- Returns
- cross correlationspd.DataFrame of shape (n_expr_topics, n_accessibility_topics)
Pearson cross correlation between expression and accessibility topics across all cells.