mira.utils.fetch_factor_meta#
- mira.utils.fetch_factor_meta(atac_adata, factor_type='motifs', mask_factors=False)#
Fetch metadata associated with transcription factor binding annotations. Returns “id”, “name”, and “parsed_name” fields. “parsed_name” is used to look up TFs in expression data.
- Parameters
- atac_adataanndata.AnnData
AnnData object of ATAC features
- mask_factorsboolean, default = False
Whether to subset the list of TFs returned to those flagged by “subset_factors”.
- factor_type{‘motifs’,’chip’}, default=’motifs’
Which factor type to filter.
- Returns
- pd.DataFrame